TOPOLINK
A package to evaluate structural models using chemical crosslinking distance constraints.
Institute of Chemistry
University of Campinas
TopoLink:
Home
Server
Download
Usage
Tools
XLFF
XL Statistics
See also:
Dalton MS lab
SIM-XL
G-score
LovoAlign
Packmol
MDLovoFit
Group software page
The TANGO project
Home
Server
Download
Server
Here it is possible to run TopoLink online in our server, without downloading and installing it. You only need to provide the input files.
Structure file (PDB or mmCIF):
Choose one input option:
Linker type:
DSS
DSG
1,6-diaminohexane
1,3-diaminopropane
Zero-length
Residue pair:
ALA
ARG
ASN
ASP
CYS
GLU
GLN
GLY
HIS
ILE
LEU
LYS
MET
PHE
PRO
SER
THR
TRP
TYR
VAL
-
ALA
ARG
ASN
ASP
CYS
GLU
GLN
GLY
HIS
ILE
LEU
LYS
MET
PHE
PRO
SER
THR
TRP
TYR
VAL
and Linker length (Cβ-Cβ):
[?]
TopoLink input file:
[Input file example]
Inter-chain crosslinks only (protein complexes)