TOPOLINK

A package to evaluate structural models using chemical crosslinking distance constraints.

Institute of Chemistry
University of Campinas

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XLFF
XL Statistics
See also:
Dalton MS lab
SIM-XL
G-score
LovoAlign
Packmol
MDLovoFit
Author's software page
The TANGO project
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XLFF is a statistical force-field for modeling protein structure using chemical cross-linking distance constraints.

The Rosetta implementation of the force field can be obtained from the github repository:

https://github.com/mcubeg/xlff/tree/master/Rosetta

A. J. R. Ferrari, F. C. Gozzo, L. Martínez
Statistical force-field for structural modeling using chemical cross-linking/mass-spectrometry distance constraints.
Bioinformatics, 2019. [LINK]

The complete dataset of models and input files reported in the paper are available here:
[ferrari_2018_bioinformatics.tar.gz]
(Warning: This a 11GB file which, uncompressed, leads to 55GB of data).

The statistical maximum linker-lengths and full statistical potentials improve significantly the probablity of obtaining correctly folded structures.